One Ecosystem :
Data Paper (Generic)
|
Corresponding author: Chiara Polce (chiara.polce@gmail.com)
Academic editor: Benjamin Burkhard
Received: 03 Jul 2018 | Accepted: 06 Sep 2018 | Published: 13 Sep 2018
© 2018 Chiara Polce, Joachim Maes, Xavier Rotllan-Puig, Denis Michez, Leopoldo Castro, Bjorn Cederberg, Libor Dvorak, Úna Fitzpatrick, Frederic Francis, Johann Neumayer, Aulo Manino, Juho Paukkunen, Tadeusz Pawlikowski, Stuart Roberts, Jakub Straka, Pierre Rasmont
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Polce C, Maes J, Rotllan-Puig X, Michez D, Castro L, Cederberg B, Dvorak L, Fitzpatrick Ú, Francis F, Neumayer J, Manino A, Paukkunen J, Pawlikowski T, Roberts S, Straka J, Rasmont P (2018) Distribution of bumblebees across Europe. One Ecosystem 3: e28143. https://doi.org/10.3897/oneeco.3.e28143
|
|
Insect pollinators are a key component of biodiversity; they also play a major role in the reproduction of many species of wild plants and crops.
It is widely acknowledged that insect pollinators are threatened by many environmental pressures, mostly of anthropogenic nature. Their decline is a global phenomenon. A better understanding of their distribution can help their monitoring and ultimately facilitate conservation actions.
Since we only have partial knowledge of where pollinator species occur, the possibility to predict suitable environmental conditions from scattered species records can facilitate not only species monitoring, but also the identification of areas potentially vulnerable to pollinators decline.
This data paper contains the predicted distribution of 47 species of bumblebees across the 28 Member States of the European Union (EU-28). Amongst the wild pollinators, bumblebees are one of the major groups contributing to the production of many crop species, hence their decline in Europe, North America and Asia can potentially threaten food security.
Predictions were derived from distribution models, using species records with a spatial resolution of 10 km accessed from a central repository. Predictions were based on records from 1991 to 2012 and on a series of spatial environmental predictors from three main thematic areas: land use and land cover, climate and topography.
These distributions were used to estimate the value of pollination as an ecosystem service. In light of the recent European Pollinators Initiative, this paper provides valuable information for a better understanding of where wild pollinators occur and it should be extended to other pollinator species.
Bombus, insect pollinators, species distribution model, Maxent, Europe
Pollination is a key ecosystem service vital to the maintenance of both wild plant communities and agricultural productivity. Over three quarters of the world’s major crops benefit from insect pollination (
Each of these approaches has some strengths and weaknesses: an expert-based model (EBM), for instance, can account for the effect of detailed local information, such as the presence of wild flower edges between crop-fields or other small patches of habitat suitable for pollinators. The EBM, however, could fail to reflect the environmental suitability for poorly known species or to capture environmental characteristics that can modify the expected suitability (e.g. climatic differences) or, again, it may not be able to predict species richness. A species-distribution model (SDM), on the other hand, can be formed by actual species records, which are used to characterise the ‘quality’ of the environment where species are recorded through statistics or machine-learning techniques for instance. An SDM, therefore, is constrained by the spatial and temporal resolution of these records; hence, it could fail to capture the effect of local landscape elements, if their spatial accuracy is greater than that which is available for the species records; or it could lead to biased predictions if the input data are biased (e.g. spatially, temporally biased) and no corrections are applied.
These two approaches have been recently applied to derive a spatial indicator for the 'pollination potential by wild insect pollinators' across the European Union, within KIP INCA project ('Knowledge Innovation Project Integrated system for Natural Capital and ecosystem services Accounting'). The original models by
Bumblebees are important pollinators not only of wild plants, but also of crops. So their decline in Europe, North America and Asia is a cause of concern. Like many other species, bumblebees are also sensitive to environmental change. Maps derived from their records across Europe were recently produced to characterise their current climatic niche and their projected distribution based on climate change scenarios (
In light of the recent EU Pollinators Initiative, the possibility to predict suitable environmental conditions based on species records is particularly important, not only to facilitate species monitoring over time and across geographical space, but also to predict areas potentially vulnerable to pollinators decline.
Hence, we present the potential distribution of 47 species of European bumblebees, derived from their records and key environmental drivers.
For the importance of bumblebees within agricultural production, maps displaying their likely distribution are a key component of Natural Capital and Ecosystem Services Accounting. For the KIP INCA project, we inferred the potential distribution of bumblebees across Europe using species occurrences and their relationships with key environmental drivers.
Environmental drivers were chosen through a combination of ecological criteria (specific for this group) and statistics (see Methods). Species records were made available by the EU-FP7 funded STEP project ('Status and Trends of European Pollinators'), at a spatial accuracy of 10 km. They consisted of validated presence-only bumblebee records, gathered from different data donors in Europe (Suppl. material
We defined:
Acknowledging that the same grid cell can host more than one record of the same species, it follows that the species' occupancy is always equal or less than the number of records for the same species.
The latitude and longitude of each record (world geodetic system WGS 1984, EPSG:4326) were projected to the LAEA (Lambert azimuthal equal-area projection, EPSG:3035) over a 10 km spatial resolution grid. For the purpose of this work, we used bumblebee records available from 1991 to 2012 inclusive, identified to the level of species. To allow us to obtain robust predictions, we considered all species with an occupancy of at least 25 grid cells (47 species). The list is included in Suppl. material
We used four types of environmental predictors:
To minimise multicollinearity between predictors (
In total, 22 predictors were used (Table
Theme | Definition | Units | Name |
---|---|---|---|
Land use / land cover | Agriculture with natural vegetation | Percent cover | AGNV |
Arable land | Percent cover | AL | |
Broad-leaved forest | Percent cover | BF | |
Coniferous forest | Percent cover | CF | |
Discontinuous urban fabric | Percent cover | DUF | |
Green urban areas | Percent cover | GUS | |
Heterogeneous agricultural areas | Percent cover | HAG | |
Inland waters | Percent cover | IWB | |
Inland wetlands | Percent cover | IW | |
Mixed forest | Percent cover | MF | |
Natural grasslands | Percent cover | NG | |
Pastures | Percent cover | PA | |
Permanent crops | Percent cover | PC | |
Salt marshes | Percent cover | BW | |
Scrub vegetation associations | Percent cover | SMH | |
Sparsely vegetated areas, including beaches and dunes | Percent cover | BDSV | |
Climate | Temperature seasonality | Standard deviation *100 | TempSeas (bio04) |
Max. temperature of warmest month | Degree Celsius | MaxTWarmM (bio05) | |
Mean temperature of the wettest quarter | Degree Celsius | MeanTWetQ (bio08) | |
Precipitation seasonality | Coefficient of variation | RainSeas (bio15) | |
Topography | Mode of elevations in the 10-km grid, from the original DEM | Metre | elmode |
Others | Average distance from natural and semi-natural areas | Kilometre | snd_km |
Species distribution models were carried out within Maxent (Maximum Entropy Modelling of Species Geographic Distributions, Version 3.4.0, December 2016) (
We followed the model calibration described in
We assessed model predictions using the AUC, which, despite known assumptions and limitations (
At last, model predictions were interpreted as 'Probability of occurrence'.
For each species, two main outputs were considered:
These outputs were also used to derive:
The assessment of model predictions through the comparison of species-model AUCs and null-model AUCs showed in all cases a performance significantly better than random (Suppl. material
The predicted probability of occurrence for each species, the species richness (i.e. the number of bumblebee species predicted to be present) and the composite probability (average probability of occurrence for those species predicted to be present) are listed in Suppl. material
Predicted number of bumblebee species, derived from the sum of each species presence maps. Presence was defined for each species using an individual threshold applied to the predicted probability of occurrence (see main text for details). Values above the threshold were set to 'presence' (1) and values below it to 'absence' (0). The sum of 'presences' indicate, for each locality on the map, the number of bumblebee species potentially present, i.e. the potential species richness.
Predicted probability of occurrence for bumblebees, resulting from the individual species distribution maps. Single species distribution maps were summed and their average extracted by dividing it by the species richness map (Fig.
Distribution of bumblebees species across Europe.
A csv table with 43665 rows and 51 columns.
Columns heading: Geographic coordinates (X, Y), predicted probability of occurrence for 47 species of bumblebees (each listed with its species name according to the binomial nomenclature), obtained with Maxent; species richness (number of bumblebee species predicted to be present); composite probability (average probability of occurrence from species predicted to be present).
Geographical coverage: European Union (28 Member States)
Spatial reference system: ETRS89 Lambert Azimuthal Equal Area (epsg projection 3035 - etrs89 / etrs-laea).
Spatial resolution: 10 km
Input data
Species data: bumblebee records from the Atlas Hymenoptera for the period 1991-2012.
Environmental predictors (continuous variables)
SM05_BB_Predictions.csv
With reference to the csv table of Suppl. material
X, Y columns: integer numbers of X and Y coordinate in LAEA Spatial Reference System;
Columns from 3 to 49: continuous positive numbers quantifying for each row (i.e. for each locality identified by the X and the Y) the predicted probability of occurrence of individual species of bumblebees (47 in total, each identified by the species name according to the binomial nomenclature);
Column 50: Richness: predicted number of bumblebee species predicted to be present (i.e. with probability of occurrence greater than zero);
Column 51: CompositeProbability: average probability of occurrence, from those species predicted to be present.
May 2018
Chiara Polce
See list of co-authors and Suppl. material
This paper (Suppl. material
Accepted for publication on 06 September 2018
Any re-use of these data must acknowledge this source. Any interpretation of results obtained from re-using these data must acknowledge the characteristics of our dataset, which are described within this paper. The authors may be contacted in case of any doubts.
Input occurrence records used to derive these data are constantly updated; they may be requested from the Atlas Hymenoptera.
Occupancy maps are based on records available from 1991 to 2012 inclusive, identified to the level of species and with a spatial accuracy of at least 10 km.
The predicted probability of occurrence must be interpreted as the potential environmental suitability based on the set of environmental predictors and the input occupancy. Additional records and updated environmental information can lead to different predictions.
The presence of a species is derived from the predicted probability of occurrence, after applying a threshold to discriminate presence from absence. No common rules exist to choose the threshold. A combination of statistical and ecological criteria might be used. For this study, we adopted 'Minimum training presence' as a threshold rule, which uses the suitability associated with the least suitable training presence record as the threshold. While this rule might lead to optimistic predictions (also assigning presence to areas at the margins of the species' ecological requirements), it also shows the potential suitability of the environment for the species. This information can be used, for instance, to select target areas for specific pollinator-friendly measures aiming at improving local environmental suitability.
Further research could investigate the possibility of adopting different thresholds for species’ presence, based on species’ commonality. Such fine-tuning could bring the predicted potential distribution closer to the species' actual distribution.
The views expressed in this article are personal and do not necessarily reflect an official position of the European Commission.
This work could not have been completed without the support of many people and organisations. In particular, we acknowledge Stéphanie Iserbyt, Samantha Bailey, David Baldock, Lucas Baliteau, Renzo Barbattini, Andreas Bertsch, Eduardas Budrys, Frank Burger, Adrien Chorein, Maurizio Cornalba, Graziano Gabriele , Andrej Gogala, Yves Gonseth, Dirk de Graaf, Aljaz Jenic, Dries Laget, Xavier Lair, Anders Nielsen, Frode Ødegaard, Theodora Petanidou, Marino Quaranta, Menno Reemer, Didier Roustide, Peter Sima, Ilkka Teräs, Bernard Vaissière, the ALARM project ("Assessing large scale risks for biodiversity with tested methods", funded by the European Commission 6th Framework Programme, GOCE, -CT-2003-506675) and the STEP project ("Status and trends of European pollinators", funded by the European Commission 7th Framework Programme, 244090).
Pierre RASMONT collected and organised the original species records made available for this work. Data contributors are listed in Suppl. Material 7.
Xavier ROTLLAN-PUIG and Chiara POLCE processed the data and performed model calibration.
Chiara POLCE produced the final models.
Chiara POLCE and Joachim MAES drafted the text and all authors contributed to its final version.
List of bumblebee species for which a distribution model was derived and list of those excluded. Occupancy refers to the presence of at least one species’ record for each 10-km grid cell. Prevalence is a parameter used by Maxent and was derived following Polce et al. (2013).
Table S II.1: Land use / land cover (LULC) predictors with reference to the original CORINE land cover classes.
Table S II.2: CORINE LC classes defining semi-natural areas.
Table S III.2 Pearson’s correlation between all bioclimatic and topographic predictors.
Table S III.3: Pearson’s correlation between bioclimatic and topographic predictors selected to minimise multicollinearity.
AUC and model settings
csv table with values for:
- x and y geographic coordinates in Lambert Azimuthal Equal Area, with a spatial resolution of 10 km;
- species-level probability of occurrence for 47 bumblebee species;
- species richness (number of species predicted to be present);
- composite probability (average probability of occurrence for those species predicted to be present).
Pages 2 to 48: two maps on each page, showing input species occupancies and predicted probability of occurrence, for 47 species of bumblebees.
Occupancy maps are based on records available from 1991 to 2012 inclusive, identified to the level of species and with a spatial accuracy of at least 10 km.
The predicted probability of occurrence must be interpreted as the potential environmental suitability based on the set of environmental predictors and the input occupancy. Additional records and updated environmental information can lead to different predictions.
Page 49: two maps showing the overall probability of occurrence for those species predicted to be present in each grid cell and predicted species richness derived therefrom.
The presence of a species is derived from the predicted probability of occurrence, after applying a threshold to discriminate presence from absence. No common rules exist to choose the threshold. A combination of statistical and ecological criteria might be used. For this study, we adopted 'Minimum training presence' as a threshold rule, which uses the suitability associated with the least suitable training presence record as the threshold. While this rule might lead to optimistic predictions (also assigning presence to areas at the margin of the species' ecological requirements), it also shows the potential suitability of the environment for the species. This information can be used, for instance, to select target areas for specific pollinator-friendly measures aiming at improving local environmental suitability.
See main text for additional details and for the data sources.
A table-like spreadsheet listing primary sources of bumblebee records used to derive the predictions presented in this paper.