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One Ecosystem :
Data Paper (Generic)
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Corresponding author: Kevin Li (likevin@umich.edu)
Academic editor: Joachim Maes
Received: 11 Jan 2024 | Accepted: 22 Mar 2024 | Published: 08 May 2024
© 2024 Kevin Li, Jonathan Fisher, Alison Power, Aaron Iverson
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Li K, Fisher JRB, Power AG, Iverson AL (2024) A map of pollinator floral resource habitats in the agricultural landscape of Central New York. One Ecosystem 9: e118634. https://doi.org/10.3897/oneeco.9.e118634
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We created a spatially and temporally-explicit model of floral area in Central New York State, USA, using public data from federal and state governmental agencies and non-governmental organisations. This model incorporates remote sensing-derived natural habitat, crop and land-use data products with roads GIS data to predict land cover indicative of floral resources for pollinators. The resulting dataset provides the necessary land-cover data to quantify floral resources available within a user-specified area (e.g. 2 km radius around the location of a bee hive). When paired with phenological data of species within the communities associated with our land-cover classes, users can predict pollinator floral resources over any specified period in a year. This dataset would be of use to both researchers and practitioners, allowing them to estimate floral resource availability around crops or hive placements. It could also identify habitat restoration to most effectively boost native pollinator populations. We present the methodology for the creation of the spatial dataset and usage information.
land cover, floral resources, floral resources, USA, agroecology, landscape ecology, ecosystem services
Pollinators provide an important ecosystem function and service (
Human-modified land uses, such as agricultural and urban areas, may significantly alter the distribution of floral resources in space and time. For example, mass-flowering crops concentrate flowering to an intense, limited period, which has an effect on pollinator behaviour (
Therefore, estimates of floral resources for pollinators must take into account the land use and land cover within a heterogeneous landscape in order to model variability over space and time (
The focal area of this dataset covers 12 counties in New York State, within the United States of America (USA): Cayuga, Chemung, Cortland, Monroe, Onondaga, Ontario, Schuyler, Seneca, Tioga, Tompkins, Wayne and Yates (Fig.
We combined land-cover data relevant to estimating floral resources, including natural habitat types (including wetlands), crops, grasses (like pasture, hayfields, oldfields and urban lawns), roadside ditches and urban areas (see Table
Description of datasets used to map floral resources of pollinators for Central New York.
|
Layer |
Source |
Data format |
Information extracted |
|
Cropland Data Layer (CDL) |
United States Department of Agriculture |
Raster, 30 m resolution |
Annual crop data and land-cover boundaries |
|
Terrestrial Habitat Map for the northeast US and Atlantic Canada |
The Nature Conservancy |
Raster, 30 m resolution |
Natural vegetation class land cover |
|
Percent Impervious Land Cover, National Land Cover Database |
United States Geological Survey |
Raster, 30 m resolution |
Percent impervious cover |
|
Chesapeake Bay Land Cover Data |
Chesapeake Conservancy |
Raster, 1 m resolution |
High resolution vegetation type (height class) and development land cover |
|
National Wetland Inventory |
United States Fish and Wildlife Service |
Vector, polygons |
Wetland polygons |
|
New York State streets |
New York State Government |
Vector, lines |
Road centre-lines for estimating roadside ditches |
|
New York State civil boundaries |
New York State Government |
Vector, polygons |
Boundaries of urbanised areas for excluding ditches |
Land-cover classes of the final combined land-cover dataset and the numeric code used to represent them in the output raster layers. The data origin column gives the input dataset that was used to provide information for the coverage of each land-cover class (CDL = Cropland Data Layer, Chesapeake = Chesapeake Bay Land Cover Data Project, NY Street = New York State Goverment roads layer, TNC = The Nature Conservancy Terrestrial Habitat Map, NWI = National Wetlands Inventory). Where there was information available from the high resolution Chesapeake Conservancy layer, more detailed delineations from that layer were used, based on the vegetation type.
|
Floral resources landcover |
Vegetation type |
Code |
Data origin |
|---|---|---|---|
|
Alfalfa |
Low vegetation |
101 |
CDL |
|
Apples |
Tree canopy |
102 |
CDL |
|
Apricots |
Tree canopy |
115 |
CDL |
|
Cherries |
Tree canopy |
103 |
CDL |
|
Corn |
Low vegetation |
104 |
CDL |
|
Grass/hay |
Low vegetation |
105 |
CDL |
|
Pasture |
Low vegetation |
106 |
CDL |
|
Peaches |
Tree canopy |
107 |
CDL |
|
Perennial |
Low vegetation |
108 |
CDL |
|
Plums |
Tree canopy |
109 |
CDL |
|
Non-resource crop |
Low vegetation |
110 |
CDL |
|
Non-resource crop-wintercover |
Low vegetation |
111 |
CDL |
|
Soybeans |
Low vegetation |
112 |
CDL |
|
Strawberries |
Low vegetation |
113 |
CDL |
| insect-pollinated crop |
Low vegetation |
114 |
CDL |
|
Developed low intensity |
NA |
201 |
CDL |
|
Developed med intensity |
NA |
202 |
CDL |
|
Lawn |
Low vegetation |
203 |
CDL |
|
Urban tree |
Tree canopy |
204 |
CDL/Chesapeake |
|
Ditch |
Ditch |
701 |
NY streets |
|
Conifer/mixed forest |
Tree canopy |
301 |
TNC |
|
Dry oak forest |
Tree canopy |
302 |
TNC |
|
Mesic upland forest |
Tree canopy |
303 |
TNC |
|
No resource |
NA |
402 |
CDL |
|
Old field |
Low vegetation |
501 |
CDL |
|
Shrubland |
Tree canopy |
502 |
TNC |
|
Water |
Water |
801 |
NWI/Chesapeake |
|
Swamp |
Tree canopy |
602 |
NWI |
|
Wet emergent |
Low vegetation |
603 |
NWI |
|
Wet shrub |
Tree canopy |
604 |
NWI |
All input geographic datasets are publicly available from the sources listed in Table
As a starting point for characterising vegetation communities, we derived crop and other land-cover information from annual versions of the Cropland Data Layer (CDL), a raster dataset released annually by the US Department of Agriculture (USDA) (
The land-cover classes of the final dataset (Table
We derived high resolution delineations of landscape features from data layers on vegetation cover, wetland inventories and roads data.
We obtained 1 m resolution vegetation coverage data from a land-cover dataset produced by the Land Cover Data Project of the Chesapeake Conservancy (
We used delineations from the vector-based National Wetland Inventory (NWI) dataset (
Road verges and ditches can be an abundant source of floral resources for pollinators (
We then simulated ditches along the selected roads using a buffer from the road centre-line, at a width dependent on the road type (full description in Suppl. material
We downscaled land-cover information from the combined crop and natural habitat land cover raster from 30 m to 1 m resolution, using Table
In cases where the vegetation type indicated in the 1 m resolution land cover layer (i.e. tree canopy or low vegetation) differed from the overlaying 30 m combined crop and habitat layer, we assigned the nearest height-matching vegetation land-cover class from crop or natural habitat land cover (further details in Suppl. material
For the three counties without high-resolution vegetation data, we used an alternative approach to estimate the area of lawn and urban tree coverage within the developed land-cover areas. In these counties, developed areas are represented by two development intensity classes, which should be converted to an average value for proportion of lawn and urban tree coverage. The conversion values in Table
Modelled mean (and standard deviation) of lawn and urban tree proportional coverage in the 1 m resolution layer, for developed (low and medium intensity) land-cover classes in the 30 m data. Values represent the average (and propagated standard deviation) across the study years of average 30 m pixel coverage in the sampled region.
| Lawn | Urban tree | |
|---|---|---|
| Developed, low intensity | 0.3600 (0.0824 SD) | 0.2229 (0.0827 SD) |
| Developed, medium intensity | 0.2406 (0.0804 SD) | 0.0747 (0.0507 SD) |
The order of data synthesis is outlined below. These are encoded as ArcGIS Modelbuilder tools that were developed for this project and are uploaded to the repository associated with this article. More details on the geoprocessing routines within each step are described in Suppl. material
Since we downscaled the 30 m resolution input data to 1 m resolution, the final land-cover data layer may not always match the classification indicated by the originating land-cover layer at a given point. This is due to the inclusion of fine-scale landscape information from the high resolution layers (the Chesapeake Conservancy, NWI and ditches layers). The additional details provided by these layers may indicate mismatches in vegetation type (e.g. trees mixed within field) or finer scale landscape features (e.g. ditches or small waterbodies), which were not included in the coarser resolution layers. In order to check that the data processing steps downscaled the 30 m resolution land-cover information with adequate fidelity, we compared the final land-cover class to the classes of the originating data layers using contingency tables based on 10,000 randomly placed points that sampled the land-cover identity in the final and input layers. In Table
Comparison of final land-cover data layer class to the input data layer class. The "fidelity" column quantifies the percent of sample points within the final land-cover class that matches the same general class in the originating layer. These values are the averages of the percent values taken for each of the eight years for which we generated separate data layers. In cases where multiple originating land-cover classes were aggregated to form the final land-cover class, these classes are indicated in the "Original class(es)" column. Land-cover classes present in Table 2, but not present here, were not sampled by the 10,000 random points used to generate these statistics and are rare land covers for this region.
|
Final land cover class |
Fidelity (%) |
Data origin |
Original class(es) |
|---|---|---|---|
|
Alfalfa |
95 |
CDL |
Alfalfa; Clover/Wildflowers |
|
Apples |
87 |
CDL |
Apples; Pears |
|
Corn |
96 |
CDL |
Corn; Sorghum; Sweet Corn |
|
Developed low intensity |
100 |
CDL |
|
|
Developed med intensity |
100 |
CDL |
Developed med and high intensity |
|
Grass/hay |
71 |
CDL |
Other Hay/Non Alfalfa; Sod/Grass Seed; Switchgrass |
|
Lawn |
87 |
CDL |
Developed Open Space; Developed med and high intensity |
|
Old field |
88 |
CDL |
Fallow/Idle Cropland |
|
Pasture |
81 |
CDL |
Grass/Pasture |
|
Perennial |
93 |
CDL |
Caneberries; Hops; Grapes; Christmas Trees; Other Tree Crops; Blueberries |
|
Non-resource crop |
92 |
CDL |
Barley; Spring Wheat; Oats; Millet; Flaxseed; Sugarbeets; Potatoes; Other Crops; Onions; Carrots; Garlic; Broccoli; Dbl Crop Soybeans/Oats; Cabbage; Cauliflower; Radishes |
|
Non-resource crop-wintercover |
97 |
CDL |
Winter Wheat; Other Small Grains; Dbl Crop Winter Wheat/Soybeans; Rye; Speltz; Triticale; Dbl Crop WinWht/Corn; Dbl Crop Oats/Corn; Dbl Crop Barley/Corn; Dbl Crop Barley/Soybeans |
|
Soybeans |
98 |
CDL |
|
|
Strawberries |
100 |
CDL |
|
|
Urban tree |
100 |
CDL |
Trees within low and med intensity developed CDL classes |
| insect-pollinated crop |
99 |
CDL |
Sunflower; Buckwheat; Dry Beans; Misc Vegs & Fruits; Watermelons; Cucumbers; Peas; Tomatoes; Peppers; Squash; Pumpkins |
|
Conifer/mixed forest |
88 |
TNC |
Laurentian-Acadian Pine-Hemlock-Hardwood Forest |
|
Dry oak forest |
90 |
TNC |
Dry Oak-Pine Forest, Central Apps and Southern Piedmont; Northeastern Interior Dry-Mesic Oak Forest |
|
Mesic upland forest |
78 |
TNC |
Appalachian (Hemlock)-Northern Hardwood Forest |
|
Shrubland |
42 |
TNC |
Shrubland/grassland; mostly ruderal shrublands, regenerating clearcuts |
|
Swamp |
100 |
NWI |
Freshwater Forested/Shrub Wetland |
|
Water |
93 |
NWI |
Freshwater point; Lake; Riverine |
|
Wet emergent |
51 |
NWI |
Freshwater Emergent Wetland |
|
Wet shrub |
69 |
NWI |
Freshwater Forested/Shrub Wetland |
In general, agricultural classes are preserved in the downscaled dataset, with fidelity values above 80% and, in many cases, above 90%. This reflects the homogeneity of agricultural areas, which makes it unlikely that the high resolution vegetation layer would indicate an unexpected vegetation type (e.g. trees in alfalfa cells). Exceptions to this could be along field edges bordering forest or other contrasting land-cover types or cases where the CDL was misclassified (
Vegetation in developed land-cover classes have 100% fidelity because cells with these two land-cover classes are only found outside of the coverage of the high resolution land-cover dataset and generally do not coincide with waterbodies or ditches that would change their identity in the final layer. Within the coverage of the high resolution land-cover dataset, low vegetation is reclassified as "lawn" and tree canopy is reclassified as "urban trees".
Natural areas have lower fidelity, likely because these land covers are more heterogeneous. Classifications at 30 m resolution represent the most predominant land cover, whereas the 1 m vegetation data can better reflect a mix of land-cover types. Our downscaling process approximated this by taking land-cover information from nearby areas with the appropriate vegetation type, but this would lead to more cases where the final land cover differed from the class of the originating layer. This is shown in more detail in Suppl. material
In addition to the full contingency tables associated with Table
We estimated the error associated with predicting lawn and urban tree cover in counties without high resolution data by using the developed land-cover factors in Table
Estimated root mean square error (RMSE) of lawn and urban land cover predictions using developed land-cover variables. Error is calculated, based on buffers around 100 random points placed in the nine counties where high resolution data are available. Calculated error is for the 2016 dataset.
| Buffer radius | Lawn % cover RMSE | Urban tree % cover RMSE |
|---|---|---|
| 15 |
23.67 |
18.77 |
| 30 |
18.40 |
11.38 |
| 100 |
15.70 |
6.25 |
| 250 |
13.04 |
4.95 |
| 500 |
10.43 |
3.64 |
| 1000 |
8.95 |
2.84 |
The output floral resources land-cover layers (Fig.
Final land-cover layer (2016 shown). Area with high resolution vegetation data is outlined in black (majority of south-eastern region). The three counties without detailed vegetation data are available with urban vegetation represented by alternative methods shown in the two inset callouts in the upper left: either as a continuous percent permeability value (upper callout) or as low and medium developed intensity categories (middle callout). In the area with high resolution vegetation data that covers most of the region, urban vegetation consists of lawn or urban tree categories (example in lower callout).
There are two versions of the dataset, each consisting of eight rasters representing CDL crop data from years 2012-2019. The versions differ in their representation of the developed areas in the counties beyond the coverage of the high resolution vegetation layer (i.e. Monroe, Seneca and Wayne Counties). A simplified version classifies developed areas into "low" and "medium" development categories. An alternative version converts these areas to continuous values representing the percent permeable area. Either of these variables can be converted to an estimate of lawn and urban tree coverage, though we recommend the category-based version (see Usage Notes). Both versions are available online in the Zenodo repository.
A map of pollinator floral resource habitats in the agricultural landscape of Central New York.
16-bit unsigned integer (1 band) GeoTIFF files. Version 1.0.
Final version (1.0) created March 2023.
Kevin Li, Aaron L. Iverson
Jon R.B. Fisher, Alison G. Power
Attribution 4.0 International (CC BY 4.0)
Zenodo
Datasets for "A map of pollinator floral resource habitats in the agricultural landscape of Central New York". DOI: 10.5281/zenodo.8256488.
Geoprocessing tools for "A map of pollinator floral resource habitats in the agricultural landscape of Central New York". DOI: 10.5281/zenodo.10827759.
Published 5 March 2024.
These layers are intended to be used to estimate available floral resources. Additional data collected within these habitats on flower phenology, abundance, size and community composition can be combined to understand landscape patterns in floral resources and associated bee abundance and richness over the growing season for this region (
Note that developed areas in Monroe, Seneca and Wayne Counties do not have high resolution spatial data of urban vegetation. Instead, the user must estimate urban vegetation in these counties by converting from either categorical development classes ("low" and "medium" categories) or a continuous percentage gradient of "permeable" land cover (the inverse of impervious cover). In order to estimate expected proportions of lawn and urban tree coverage within these areas, we present conversion factors, based on the relationships between the development categories and the proportional coverage of the two urban vegetation types (Table
Suppl. material
Aaron L. Iverson conceived of the project, conducted fieldwork, procured funding, supervised and contributed to writing the manuscript. Kevin Li conducted geoprocessing and analysis and wrote the manuscript. Jon R.B. Fisher and Alison G. Power provided light edits to the manuscript and minor guidance to the project design.
This document explains the geoprocessing steps for creating the data. The steps detailed within correspond to the ArcGIS Modelbuilder Toolbox tools included in the online Zenodo repository (DOI: 10.5281/zenodo.10827759).
Contingency tables comparing input and final land-cover classes.